PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03656.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB_related

Protein Properties

Length: 472aa MW: 52975.1 Da PI: 10.2904

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03656.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3.1e-07	8	38	2	32
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg 32 g W t+E++ll av ++G+++W+t+a+++ POO03656.1 8 GEWGTWEELLLGGAVLRHGTRDWDTVAAELR 38 78**************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
METEVVGGEW GTWEELLLGG AVLRHGTRDW DTVAAELRAR ALISPFNFTA QMCKAKYEDL 60 QQRYSGCTNN IKRIHFDSTF VRAWFEELRK KRMAELRQAL ELSEDSIGSL ETKLETLKAE 120 KVGGTRVNYA SSQTESPVTS QKSEGFESFS KESKDGLSAG SFTLETRTSW SADQCPIPSA 180 VSAEETETKP EILCTSEVAK MSIIEKLVEN MNERQGGILK KRRGKRKRKD CSKEIKESSV 240 GESDFLDSAE PIIAFRSKEN STSDCGEVSG SSHLDNKIKG TKKDGIDDLL KVFNSIVEHK 300 CASTFRHRLD SQKRGRYKKM IRKHMDFDTL RSRITGRSIM SIEELFRDLL LLANNAMVFY 360 SKTTREHKSA MLLRDLTTKT LHQHFNDSRN TKAASANLSV ITTIHSSPPP VKPQSVHPGN 420 RNLPGKTAES KINDVAKSPK KGSAQPKRVG RKSNNTQQTV TPVKGRKRGR IR

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

METEVVGGEW GTWEELLLGG AVLRHGTRDW DTVAAELRAR ALISPFNFTA QMCKAKYEDL  60
QQRYSGCTNN IKRIHFDSTF VRAWFEELRK KRMAELRQAL ELSEDSIGSL ETKLETLKAE  120
KVGGTRVNYA SSQTESPVTS QKSEGFESFS KESKDGLSAG SFTLETRTSW SADQCPIPSA  180
VSAEETETKP EILCTSEVAK MSIIEKLVEN MNERQGGILK KRRGKRKRKD CSKEIKESSV  240
GESDFLDSAE PIIAFRSKEN STSDCGEVSG SSHLDNKIKG TKKDGIDDLL KVFNSIVEHK  300
CASTFRHRLD SQKRGRYKKM IRKHMDFDTL RSRITGRSIM SIEELFRDLL LLANNAMVFY  360
SKTTREHKSA MLLRDLTTKT LHQHFNDSRN TKAASANLSV ITTIHSSPPP VKPQSVHPGN  420
RNLPGKTAES KINDVAKSPK KGSAQPKRVG RKSNNTQQTV TPVKGRKRGR IR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	226	LKKRRGKR
2	220	225	KKRRGK
3	222	230	RRGKRKRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	2e-24	MYB_related family protein