PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03730.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

GRF

Protein Properties

Length: 623aa MW: 66911.1 Da PI: 9.2043

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	252	296	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e POO03730.1 252 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 296 79****************************************985 PP
2	QLQ	60.5	4.9e-21	182	218	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+P+P++Ll +i+k POO03730.1 182 GPFTQSQWMELEHQALIYKYITANVPIPSNLLIPIRK 218 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MDFGVVMGLD NYGSGAVSDS ATGFGSISSS PDPEAKQRPY GSGLFPVKQE RSAAASGIIS 60 SSSSSTGLEE YLRSSKVAKT SIDDFSYCKL GMVQRNNVSS VLMRSNCGQQ QQQQQQMLSF 120 SSPKSEALMV DNKAASHNSN AATLFPCNFP NALLSAYTRN TGYNSGSLNG GNMHGTIAGI 180 RGPFTQSQWM ELEHQALIYK YITANVPIPS NLLIPIRKSI ESAAFSHFPA GLLRPNILGW 240 GSFHLGFSNN ADPEPGRCRR TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQTGA 300 TAAAATTTAT TTTSKLMPMA SSASSVAMPG AGGSSNSLAI SNHHHQIQSL ETGASNTSSA 360 THLNRMQQQN TTGLSLLSKE TSFLTGSSRE FGLVTTDSLL NPSQKNTSLL NCRSFGSSRD 420 LTDRSETTEP NQQQQQQHQH SLRHFIEDWP KSQPNRSALS WPEIDIQSDR TQLSISIPIA 480 STDHFIPSAS SPDQKASRLS PLRLSRELDR VPMSLGVGTG EQMRSRPQAN WIPIAWENSL 540 GGPLGEVLHH TNNSSNNNGS VECKNNNSSS ASSSVLNLMT EGWDSSPPMG SSPTGVLQKT 600 AFGSLSNSSA GSSPRAENNK SLG

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MDFGVVMGLD NYGSGAVSDS ATGFGSISSS PDPEAKQRPY GSGLFPVKQE RSAAASGIIS  60
SSSSSTGLEE YLRSSKVAKT SIDDFSYCKL GMVQRNNVSS VLMRSNCGQQ QQQQQQMLSF  120
SSPKSEALMV DNKAASHNSN AATLFPCNFP NALLSAYTRN TGYNSGSLNG GNMHGTIAGI  180
RGPFTQSQWM ELEHQALIYK YITANVPIPS NLLIPIRKSI ESAAFSHFPA GLLRPNILGW  240
GSFHLGFSNN ADPEPGRCRR TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQTGA  300
TAAAATTTAT TTTSKLMPMA SSASSVAMPG AGGSSNSLAI SNHHHQIQSL ETGASNTSSA  360
THLNRMQQQN TTGLSLLSKE TSFLTGSSRE FGLVTTDSLL NPSQKNTSLL NCRSFGSSRD  420
LTDRSETTEP NQQQQQQHQH SLRHFIEDWP KSQPNRSALS WPEIDIQSDR TQLSISIPIA  480
STDHFIPSAS SPDQKASRLS PLRLSRELDR VPMSLGVGTG EQMRSRPQAN WIPIAWENSL  540
GGPLGEVLHH TNNSSNNNGS VECKNNNSSS ASSSVLNLMT EGWDSSPPMG SSPTGVLQKT  600
AFGSLSNSSA GSSPRAENNK SLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	6e-84	GRF family protein