PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03976.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 382aa MW: 43244.9 Da PI: 6.6367

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61	2.4e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++++G ++W++ ++ g++R++k+c++rw +yl POO03976.1 14 KGPWTPEEDQKLVHYIHKHGHRSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53	7.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ +++++ lG++ W++Ia +++ gRt++++k++w+++l POO03976.1 67 RGNFSQDEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MGRSPFCDED GLKKGPWTPE EDQKLVHYIH KHGHRSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF SQDEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHQPRP DPFSSLPHLM ALANLRDLIQ VDHHHENHDY LTRLQFLRSL LTLQYSTSSA 180 SNYGNNADRD HILMEPYFSN MNTLINSVQI PVGENNNQVS QIFSTTSQPL HYHDDHLDPV 240 EVPFSSTTST NSQLLPSNLM TNNGISTSTG HDEIMGHQGN NNSLDFTSMV IMSQGDNPPD 300 HHDYSPWLFL PPLSPSNNNI SIVNPPNFLS STGHQHERST SNNSTIPEDF ASSSTSSYGG 360 PTSTSTSSYW PEIFLHDHDI IS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MGRSPFCDED GLKKGPWTPE EDQKLVHYIH KHGHRSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF SQDEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRP DPFSSLPHLM ALANLRDLIQ VDHHHENHDY LTRLQFLRSL LTLQYSTSSA  180
SNYGNNADRD HILMEPYFSN MNTLINSVQI PVGENNNQVS QIFSTTSQPL HYHDDHLDPV  240
EVPFSSTTST NSQLLPSNLM TNNGISTSTG HDEIMGHQGN NNSLDFTSMV IMSQGDNPPD  300
HHDYSPWLFL PPLSPSNNNI SIVNPPNFLS STGHQHERST SNNSTIPEDF ASSSTSSYGG  360
PTSTSTSSYW PEIFLHDHDI IS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-97	MYB family protein