PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO04055.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MIKC_MADS
Protein Properties Length: 314aa    MW: 35240.2 Da    PI: 4.8518
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO04055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.8e-28958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  POO04055.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                79********************************************9997 PP
2K-box29.23.9e-1191162879
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                 ++ ++++e+lqqe+ +L +++++ ++++R +  + L+  s++eL + e++L + l ++ ++K+ ll +q++ 
  POO04055.1  91 AAVNSDNEELQQEIGRLHQQLQMAEEQIRMYEPDPLKITSMEELDSCEKNLVDTLARVMQRKEYLLSNQLSS 162
                 45678899*************************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
RSEIQNKEHL LRTLQQLRSE SDIAFQFSNQ AAVNSDNEEL QQEIGRLHQQ LQMAEEQIRM  120
YEPDPLKITS MEELDSCEKN LVDTLARVMQ RKEYLLSNQL SSYEASGIPH QQVFPASFEN  180
TIAQIFDASA PLDQLRDNVF RDLASSVYDP FSQGTSSNAD PSSMQGECHV PINAGGDHGD  240
HLQAAWSHQA YNPTSTGHLP SLMPSNMYSQ IQQELGTSDI PEMVSHQQME IPNPIGSSNV  300
LQADNTTEAA NFGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-88MIKC_MADS family protein