PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_co4022861.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 114aa MW: 12307.8 Da PI: 5.4899

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_co4022861.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	58.1	2.7e-18	2	53	49	100
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e Pav_co4022861.1_g010.1.mk 2 LPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAE 53 799********************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence
ELPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DVLQTQLALA QAEVVHLRVR 60 QTASFSNHGL SPASPTNSGS PSSKFMGSQA RPIFDMDMMV DHTSLGLGES MWSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-38	LBD family protein