PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_co4029521.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 178aa    MW: 19983.2 Da    PI: 4.8396
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_co4029521.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-182451356
                               HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               + Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Pav_co4029521.1_g010.1.mk  2 HMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 45
                               68*****************************************9 PP
2HD-ZIP_I/II121.25.2e-391821192
                HD-ZIP_I/II 11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                               v++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+++L++e+ 
  Pav_co4029521.1_g010.1.mk  1 VHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLSNYDSILKENHKLKSEVV 82
                               689***************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
VHMLEKSFET ENKLEPERKT QLAKKLGLQP RQVAVWFQNR RARWKTKQLE RDYDLLKSSY  60
DSLLSNYDSI LKENHKLKSE VVSINQKLEA KEETSNIKAA AFAPDHADDD KCDPLVPAGY  120
EMRDAVPISY AAGLQYSCSV KVEDRLSSGS GGSAVVDEAE GPQPVDSGDS YNFLNEDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14048RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-47HD-ZIP family protein