PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_co4043761.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 291aa    MW: 32879.9 Da    PI: 7.0965
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_co4043761.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH468.7e-15209234126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                +ktelC+ +++tG+C+yG+ C+FaHg
  Pav_co4043761.1_g010.1.mk 209 FKTELCNKWQETGECPYGEHCQFAHG 234
                                79***********************8 PP
2zf-CCCH19.32e-06247271125
                                --S---SGGGGTS.--TTTTT-SS-S CS
                    zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                                ykte Cr  ++ G  C+yG rC+F H
  Pav_co4043761.1_g010.1.mk 247 YKTEVCRMVLA-GvACPYGHRCHFRH 271
                                9**********.66**********88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
KPSLARYNES EPDVSSNHPH RQLYHSLLVQ DHQEMVNRHS RTLKQLHEAS EEADALRREN  60
IHLRALNLEL NKHLSLLIHA SVQKQFVSPG SVETTPFGIV NRLHGMSIDD KRAEEDESDE  120
SPTSVIESEG ADAENIDVER FTLPKSISVR SNGYVKVAQP GPSTAAGTRA ATRPRTATTF  180
NASQKVYVPA GGRKEQEPLE LEVYNQGMFK TELCNKWQET GECPYGEHCQ FAHGIEELRP  240
VIRHPRYKTE VCRMVLAGVA CPYGHRCHFR HALTENEKFM GPNKPRAMKL D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-76C3H family protein