PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_co4053135.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 225aa    MW: 25097.4 Da    PI: 9.6022
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_co4053135.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY50.34.7e-161752152160
                                -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                       WRKY  21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                                 rsYY+C+s  gCp++k+ver+ edp+++++tYeg+H+h+k
  Pav_co4053135.1_g010.1.mk 175 RRSYYKCSSVrGCPARKHVERCFEDPTMLVVTYEGDHQHPK 215
                                69******988****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
NQKRIRRGPL PKSHDINQVE LLDSPNPSPQ NTTHNWPQPH PQPQPQNCLV RQFFSAVHQS  60
DQATANVIHS NSFSMGREKK PKPALQQGQS EAGVVLPNNL IMGLNQFSQK PTSTSLISMD  120
GSSLNTRMIH YSSSELLASR DCTSMFSSKR KCQVKSEEAT PRCLVSAGGC HCSKRRSYYK  180
CSSVRGCPAR KHVERCFEDP TMLVVTYEGD HQHPKITFQA PTVAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-21WRKY family protein