PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_co4079233.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 136aa    MW: 15504.6 Da    PI: 10.6369
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_co4079233.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.92.6e-4241117278
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                C v+gC++dlse+++yhrrhkvCe hsk+++v+++g+eqrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q 
  Pav_co4079233.1_g010.1.mk  41 CLVDGCNSDLSECRDYHRRHKVCELHSKTSKVTIKGQEQRFCQQCSRFHSLEEFDEGKRSCRRRLAGHNKRRRKPQL 117
                                **************************************************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
MEKGSKGKLK DPGVSIMKSS SSAASLKRPR RTNNGAQIAS CLVDGCNSDL SECRDYHRRH  60
KVCELHSKTS KVTIKGQEQR FCQQCSRFHS LEEFDEGKRS CRRRLAGHNK RRRKPQLEPM  120
STNLGRFLSS YQGLDF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198115KRSCRRRLAGHNKRRRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-44SBP family protein