PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000009.1_g670.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 336aa    MW: 38157.7 Da    PI: 4.4109
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000009.1_g670.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.5e-2194147356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k++++t++q++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Pav_sc0000009.1_g670.1.mk  94 KKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 147
                                5678*************************************************9 PP
2HD-ZIP_I/II1352.5e-4393184192
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekkrrl+ +qv++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+
  Pav_sc0000009.1_g670.1.mk  93 EKKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLSNYDSILKEN 176
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelk 92 
                                ++L++e+ 
  Pav_sc0000009.1_g670.1.mk 177 HKLKSEVV 184
                                ****9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MEPCRFFFDP STTSSACQQG GGNMLFLGNA DHVFREYYLA DIVVWDVDDD DEGPRSVMGL  60
MDQESSRRRS LFSSSSSQDE LFDEEYYDEQ LPEKKRRLTP DQVHMLEKSF ETENKLEPER  120
KTQLAKKLGL QPRQVAVWFQ NRRARWKTKQ LERDYDLLKS SYDSLLSNYD SILKENHKLK  180
SEVVSINQKL EAKEETSNIK AAAFAPDHAD DDKCDPLVPA GYEMRDAVPI SYAAGLQYSC  240
SVKVEDRLSS GSGGSAVVDE AEGPQPVDSG DSYNFLNEDN VHNNYPHHHH HHSGVNSEED  300
DGSDDGRGYF SDVFAAAVEE QVQQEEGVSM GWWVWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-55HD-ZIP family protein