PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000013.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23344.6 Da    PI: 4.1967
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000013.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25e-14953145
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               k+i+nk   + tfskRr+g++ KA  L+ L +a++a+i fs+ +k
  Pav_sc0000013.1_g020.1.mk  9 KKINNKNYLKATFSKRRKGLFCKATDLCCLSGAQIAIITFSPGNK 53
                               68999************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MGKRKIDIKK INNKNYLKAT FSKRRKGLFC KATDLCCLSG AQIAIITFSP GNKPFIFGHP  60
SAETVIDRFL GEQASCTTDD HDDEGIGPVE GEEDGHEDLE ANHDEEDIGS VDAEDSHEDS  120
EANQEEEKED EAGGDGEKVS VWWDEPIDEN LGLHELKKYK GLLECLKENV ASKLDEMNKR  180
EFYTKDYLAM LNSEIGSTST TCQETDLCD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-25M-type_MADS family protein