PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000017.1_g420.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 567aa MW: 60764.5 Da PI: 6.6385

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000017.1_g420.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.5e-09	378	425	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Pav_sc0000017.1_g420.1.mk 378 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 425 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MGKDSLATPS WNPSSFGMEM QSNELNCGSQ QLPNSLFNAN WDNSMDQSDP FESALSSIVS 60 SPAASNAAIA AGKGSGDGEM IRELIGRLGS ICNSGEISSH SYICGNNSTN TSCYSTPLNS 120 SPKLNLSMID PQMRGNLPIP GNHLPSHPSL APFQADPGFV ERAARFSCFG GGNFGGLNGQ 180 VNLNEAELAY RSMPTIDSGK LSRDSSNQSL KVAAGSQLGV QESNKSSPQG GNSAPDKKFS 240 RLSRSSTPEN TELGDSREGS SVSEQIPGGD MSVKAENVTN SRKRKPVARG KAKETSSSPS 300 VKDGKVVAEK EETNSKRSKT DEASGNEKAA AKAKTEPNGG SKATGDGAQK QTKDNSEPPE 360 APKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY 420 VQSLQRQVEF LSMKLSTVNP RMDLNMEALL SKEILQSRGS LQNALYQLDS AIPSFPFGYQ 480 PQQLPPLHSS SISSGTEPQF PENPLNAAMR QSQGMQLPTF DRFGGAAPQA PQFFEDDLQS 540 VVQMGFGQIQ QESLHGSMAS AQMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MGKDSLATPS WNPSSFGMEM QSNELNCGSQ QLPNSLFNAN WDNSMDQSDP FESALSSIVS  60
SPAASNAAIA AGKGSGDGEM IRELIGRLGS ICNSGEISSH SYICGNNSTN TSCYSTPLNS  120
SPKLNLSMID PQMRGNLPIP GNHLPSHPSL APFQADPGFV ERAARFSCFG GGNFGGLNGQ  180
VNLNEAELAY RSMPTIDSGK LSRDSSNQSL KVAAGSQLGV QESNKSSPQG GNSAPDKKFS  240
RLSRSSTPEN TELGDSREGS SVSEQIPGGD MSVKAENVTN SRKRKPVARG KAKETSSSPS  300
VKDGKVVAEK EETNSKRSKT DEASGNEKAA AKAKTEPNGG SKATGDGAQK QTKDNSEPPE  360
APKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY  420
VQSLQRQVEF LSMKLSTVNP RMDLNMEALL SKEILQSRGS LQNALYQLDS AIPSFPFGYQ  480
PQQLPPLHSS SISSGTEPQF PENPLNAAMR QSQGMQLPTF DRFGGAAPQA PQFFEDDLQS  540
VVQMGFGQIQ QESLHGSMAS AQMKVEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	9e-72	bHLH family protein