PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000022.1_g160.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 440aa MW: 49175.1 Da PI: 4.7171

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000022.1_g160.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.2e-12	217	268	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ Pav_sc0000022.1_g160.1.mk 217 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 268 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MEKEENNYSA FMPPGNFNNL DYTLDNHHDE DQQMMKSRVD ETPSENNNGM VNYLMNNHHQ 60 LQQQQQQMST QLAPAGFCGS TSTSFDKLSF ADVMQFADFG PKLGLNQTKI SEEEPSGVDP 120 VYFLKFPVLN DKFDNDVMVP QAEERFTGLG EEGKTKSMEE DQDEEGRVSG SNSVQQLQFL 180 GEDLENNPRG GVEPEPAAKN KRKRPRTTKT TQEVESQRMT HIAVERNRRK QMNEHLRVLR 240 SLMPGSYVQR GDQASIIGGA IEFVRELEQL LQCLESQKRR RLLGEAPRHE VGESAGAMAM 300 AVMPAVQAAQ GGSGGPLIFP AANLPVNPND PIKFVDFETG LREESAENKS CFADVEVKVL 360 GFDAMIKILS QRRPGQLIKA IAALEDLQLN ILHTNITTIE QTVLYSFNVK VESESRFTAE 420 DIATSVQQIF SFIHANTASI

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MEKEENNYSA FMPPGNFNNL DYTLDNHHDE DQQMMKSRVD ETPSENNNGM VNYLMNNHHQ  60
LQQQQQQMST QLAPAGFCGS TSTSFDKLSF ADVMQFADFG PKLGLNQTKI SEEEPSGVDP  120
VYFLKFPVLN DKFDNDVMVP QAEERFTGLG EEGKTKSMEE DQDEEGRVSG SNSVQQLQFL  180
GEDLENNPRG GVEPEPAAKN KRKRPRTTKT TQEVESQRMT HIAVERNRRK QMNEHLRVLR  240
SLMPGSYVQR GDQASIIGGA IEFVRELEQL LQCLESQKRR RLLGEAPRHE VGESAGAMAM  300
AVMPAVQAAQ GGSGGPLIFP AANLPVNPND PIKFVDFETG LREESAENKS CFADVEVKVL  360
GFDAMIKILS QRRPGQLIKA IAALEDLQLN ILHTNITTIE QTVLYSFNVK VESESRFTAE  420
DIATSVQQIF SFIHANTASI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	229	RMTHIAVERNRR
2	278	282	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-121	bHLH family protein