PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000026.1_g180.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 390aa MW: 44088.8 Da PI: 6.1789

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000026.1_g180.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00013	258	280	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Pav_sc0000026.1_g180.1.mk 258 YKCETCNKVFKSYQALGGHRASH 280 9************9999998887 PP
2	zf-C2H2	11.3	0.0011	313	335	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H Pav_sc0000026.1_g180.1.mk 313 HECPVCFRVFSSGQALGGHKRSH 335 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MERHKCKLCM RSFSNGRALG GHMRSHMMNL PIPAKPEQEE EEEEVPPGRN QDQVQLLIDE 60 LAESASASSS SSEEDEHGEE EEGEDGMFYG LRENPKRSIR LVDPEFSFAV DAGSVVLQDR 120 ESETESSKNP TRRRSKRTRK SAMLELHHQY QHHHQKLEAL KKIKLKNKVI SSSKTDSFEP 180 EPVSSISDAT TEEDVAFCLM MLSRDKWKKQ DQQHHQQQHQ HEQGQDQGDE AERSMEDSDE 240 SEEQQVKFPR TRTTRGKYKC ETCNKVFKSY QALGGHRASH KKIKASNPNP IYEHELEQEN 300 NAGASSVAER KTHECPVCFR VFSSGQALGG HKRSHVTGSA AAAATHVKIL NKLGDNLIDL 360 NLPAPVEDDE ISQIELSAVS DAEFVNPIRR

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MERHKCKLCM RSFSNGRALG GHMRSHMMNL PIPAKPEQEE EEEEVPPGRN QDQVQLLIDE  60
LAESASASSS SSEEDEHGEE EEGEDGMFYG LRENPKRSIR LVDPEFSFAV DAGSVVLQDR  120
ESETESSKNP TRRRSKRTRK SAMLELHHQY QHHHQKLEAL KKIKLKNKVI SSSKTDSFEP  180
EPVSSISDAT TEEDVAFCLM MLSRDKWKKQ DQQHHQQQHQ HEQGQDQGDE AERSMEDSDE  240
SEEQQVKFPR TRTTRGKYKC ETCNKVFKSY QALGGHRASH KKIKASNPNP IYEHELEQEN  300
NAGASSVAER KTHECPVCFR VFSSGQALGG HKRSHVTGSA AAAATHVKIL NKLGDNLIDL  360
NLPAPVEDDE ISQIELSAVS DAEFVNPIRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-52	C2H2 family protein