PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000030.1_g260.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 355aa MW: 40081.7 Da PI: 5.3888

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000030.1_g260.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.5	6.2e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs+++++ +s Pav_sc0000030.1_g260.1.mk 9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRVSHFS 58 79*******************************************99987 PP
2	K-box	20.2	2.4e-08	130	199	9	78
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 + +++ e+lq+e+ L++++++ ++++R + + L+ s+ e ++ e+ L + l+++ ++K+ ll ++++ Pav_sc0000030.1_g260.1.mk 130 AVSSEIEELQREIGGLQQQLQMAEEQIRIYEPDPLKITSMAEFESCEKSLMDTLTRVMQRKEYLLSNHLS 199 5577899**********************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRVSHFSGK 60 RRIEDVFTRY IDLPDQEREH AIIFPDHNKH PNLQNKEVRY TTSSNYLRRT LQQIRSENEI 120 ALQLANSPTA VSSEIEELQR EIGGLQQQLQ MAEEQIRIYE PDPLKITSMA EFESCEKSLM 180 DTLTRVMQRK EYLLSNHLSS YDSSGMQQVL PGSFENEVAG WLSSGGHNQA QIYDASTPLD 240 HQLRNLSSTL YDPFSQGTSS NADPSSMGEC HVSVTNASDG ELPPWSQAYT NSSGHPSTLM 300 PSGLLPQFQH TMVGSNMQEI MPHEQVEIPV GSPNVQGYNE GADYHENKVP QLNGH

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRVSHFSGK  60
RRIEDVFTRY IDLPDQEREH AIIFPDHNKH PNLQNKEVRY TTSSNYLRRT LQQIRSENEI  120
ALQLANSPTA VSSEIEELQR EIGGLQQQLQ MAEEQIRIYE PDPLKITSMA EFESCEKSLM  180
DTLTRVMQRK EYLLSNHLSS YDSSGMQQVL PGSFENEVAG WLSSGGHNQA QIYDASTPLD  240
HQLRNLSSTL YDPFSQGTSS NADPSSMGEC HVSVTNASDG ELPPWSQAYT NSSGHPSTLM  300
PSGLLPQFQH TMVGSNMQEI MPHEQVEIPV GSPNVQGYNE GADYHENKVP QLNGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-131	MIKC_MADS family protein