PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000037.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 292aa    MW: 33416.7 Da    PI: 5.9292
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000037.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.65.3e-35115228299
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa 70 
                                +++k rhsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d++sk+i+WL+++ak+ai +l ++                    
  Pav_sc0000037.1_g020.1.mk 115 TARKERHSKVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALSESelpgkeydctninnsA---- 194
                                789*************************************************************7777766664432211.... PP

                        TCP  71 sec...eaesssssasnsssg..........kaaksaakskk 99 
                                      ++ +++s++++++++          +      + ++
  Pav_sc0000037.1_g020.1.mk 195 --QqteQDIEEESMHQFQHHQrsyggepeklN------NVNS 228
                                ..111222222222222222222233222221......1111 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MSHLQDILRL QMLQQRGSKN EEQENEDQDQ PEDVQEEEQQ SQKRLIGQYQ HVQEPPNYGT  60
LNGKMLNTDM AKSSRKSCYS MSSSSSHLAS EQAEINNARY GKIVKVHGGH IVRSTARKER  120
HSKVYTSKGP RDRRFRLSAP TAIQFYDVQD RLGYDRPSKA IDWLIEKAKA AIEALSESEL  180
PGKEYDCTNI NNSAQQTEQD IEEESMHQFQ HHQRSYGGEP EKLNNVNSYK EPVLDHHQLS  240
SMNYAEEALN SASSLSDSKM EVAWFQRLMA WNYNAADGGE GCPFNSSHLY LQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.13e-39TCP family protein