PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000037.1_g440.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 252aa MW: 27627.6 Da PI: 4.785

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000037.1_g440.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.8	8.9e-16	32	123	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstc 79 +W+++ + +L++a ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ ++k+yk + ++ ++ + +s++ Pav_sc0000037.1_g440.1.mk 32 CWSEDATSTLVDAWGRRYLELNRGCLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKFEMNRVSSSNGALTSSW 115 7**************************************99999******************9888888877777889 PP trihelix 80 pyfdqlea 87 p+f++l+a Pav_sc0000037.1_g440.1.mk 116 PFFERLDA 123 *****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGDLTDPQMT PPHATATTPS SNPRPMPVRE DCWSEDATST LVDAWGRRYL ELNRGCLRQK 60 DWQEVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKFE MNRVSSSNGA LTSSWPFFER 120 LDALIGSNYK KPSPSPPVAV PLPLGYRKTP SPATVVTAVA LPQKRSASSA AVDEGFFRMN 180 YSAVAAAAAA GAEDDDDEDE DEDDEVNYEV DEEVEMERER DSGGEIGGGG GGEGLKRLAR 240 AIERKGNPYL IV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-38	Trihelix family protein