PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000042.1_g100.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 132aa    MW: 14777.6 Da    PI: 5.9121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000042.1_g100.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.66.4e-121461149
                        NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                               lppGfrF+Ptdeelv +yL+ kv + +l++ ++i+e  +++ e w L +
  Pav_sc0000042.1_g100.1.mk 14 LPPGFRFQPTDEELVFQYLRCKVFSCPLPA-SIIPENALNQKENWVLCR 61
                               79****************************.88************9963 PP
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    
MDKFNFVRNG MIRLPPGFRF QPTDEELVFQ YLRCKVFSCP LPASIIPENA LNQKENWVLC  60
RIFSKKRSCK TDEEVIRVNN AEMVHAPQTN NNQSPVSSSS SCSSSSGITE VTSSSEAGDE  120
EEISGCTKFR SC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-20NAC family protein