PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000042.1_g600.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 239aa    MW: 26577.3 Da    PI: 9.242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000042.1_g600.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-1951100255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr++k +g+W+AeIrdp   + +  r +lg+++tae Aa a+++a+++++g
  Pav_sc0000042.1_g600.1.mk  51 RYRGVRQRK-WGKWAAEIRDP---N-KaVRLWLGTYDTAEAAALAYDKAALSFKG 100
                                69******9.**********9...3.35***********************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MISALAQVIG NTDQTPLQQV QGNPFITSQS SPAESQSQPA LQDQGNVRRQ RYRGVRQRKW  60
GKWAAEIRDP NKAVRLWLGT YDTAEAAALA YDKAALSFKG SKAKLNFPER VQASSELGNL  120
TITTQQQHNL NNPENVERVQ VTDPVVPNPP HQPISQPTYS NVFCYAPYVQ GGSNNVDYNV  180
QVLPSHENYG PQILPTTSST SSSMPSQQEE LQRMQFGSSR SSSDLPNKYR KDFEGSHSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-16ERF family protein