PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000044.1_g530.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 326aa    MW: 36010.8 Da    PI: 6.1656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000044.1_g530.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-1051100154
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  Pav_sc0000044.1_g530.1.mk  51 RKVQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILTDTIQMLKDL 100
                                5677889********************997....79****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MDQWNGDDFS AASAPSSAQP LLLPSSNRSH NSNSESRQRP DVETKDPIVA RKVQKADREK  60
LRRDRLNEHF LELGNTLDPD RPKNDKATIL TDTIQMLKDL TADVSKLKAE CATLTDESRE  120
LTQEKNELRE EKASLKSDIE NLNVQYQQRL RVMFPWAAMD PSVVMAPQYS YPMPVAVPPG  180
SIPMHPSLQP FPYFQTQTPA AIPNPCSTFV PYQAPANPPV EQPAPQYASV SHLSSKQDSR  240
SKSSDMQRGS NAERCDDSND VATDLELKMP GSSTQQDSSS GGRKAKQSQR KDRVVTDGSS  300
SSRYSSSQGL QDNSSNSVGD VPKSNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.14e-83bHLH family protein