PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000044.1_g960.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27135.8 Da    PI: 9.9055
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000044.1_g960.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.39.6e-29959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+tgk++ey+s
  Pav_sc0000044.1_g960.1.mk  9 KLIENHTNRQVTYSKRRNGIFKKAQELTVLCDARVSLIMLSNTGKMHEYIS 59
                               569**********************************************86 PP
2K-box79.11.1e-2671163193
                      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                                yqk+ g++l++++++ ++  l kLk+ +++L+re+R++lG dL+ L++ +L++Le+++ +sl+ iR++K++++++q+e+++kk 
  Pav_sc0000044.1_g960.1.mk  71 YQKTMGVDLWSSHYQAMKDTLWKLKEINNKLRREIRQRLGHDLNGLTHAQLRSLEDKMASSLEVIRERKYHVIKTQTETSKKKV 154
                                7999999***************************************************************************** PP

                      K-box  85 kelqeenka 93 
                                k+l+e+  +
  Pav_sc0000044.1_g960.1.mk 155 KNLEERRGN 163
                                ****98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD ARVSLIMLSN TGKMHEYISP  60
TTTTKRMYDD YQKTMGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTHAQ  120
LRSLEDKMAS SLEVIRERKY HVIKTQTETS KKKVKNLEER RGNMLHGYEL ASEDPQYGYV  180
VNEGEYESAV ALANGASNLF TIHLHQDIRD HSNLHHHGGS SLGSSITHLH DLRLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-73MIKC_MADS family protein