PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000045.1_g170.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 190aa    MW: 21475.8 Da    PI: 7.8532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000045.1_g170.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07166188325
                                S---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                                t+lC++      C yGdrCkF H
  Pav_sc0000045.1_g170.1.mk 166 TRLCKNLKNLNGCLYGDRCKFQH 188
                                89********************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MVALVDYNAT SLIKLSRCRP VCEDLKNLNG CLYGNRCKFS IRLDTSIHAL LPLALLSHTS  60
SVTFTQFLFT SSNMSSRAQK IVDDFNITIT NLGFECFDPP VLLAPTTVQD EFNLALGRPL  120
VTEELEEGVT VNIFYKTRLC DEWKISVGCS HGLGCYFAHR RAELWTRLCK NLKNLNGCLY  180
GDRCKFQHQP