PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000052.1_g850.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 205aa    MW: 22159.4 Da    PI: 7.2531
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000052.1_g850.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.71.5e-5722117297
                      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                                reqdr+lPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplkv
  Pav_sc0000052.1_g850.1.br  22 REQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKV 105
                                89********************************************************************************** PP

                      NF-YB  86 ylkkyrelegek 97 
                                yl+++re+egek
  Pav_sc0000052.1_g850.1.br 106 YLQRFREMEGEK 117
                                **********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MADSDNDSGG AHTKSNSELS PREQDRLLPI ANVSRIMKKA LPANAKISKD AKETVQECVS  60
EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEEYV EPLKVYLQRF REMEGEKSSV  120
AARDKDPSGG GGNGGVGYES GGGSGGAGVY WQCVQQQQQQ QQQHQHQHQH QHQGHVYGGS  180
GFHQMGVSGV GLGKGGPGSN MGRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.18e-74NF-YB family protein