PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000062.1_g180.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 413aa    MW: 45679.1 Da    PI: 10.604
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000062.1_g180.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.7e-14346398255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++  g++ AeIrdp   +   r r++lg + t eeAa a+++a+ +++g
  Pav_sc0000062.1_g180.1.mk 346 HYRGVRQRR-LGKFTAEIRDPA--KkvSRNRVWLGCYETSEEAALAYDRAAYRIHG 398
                                7*****999.8*********84..34335*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    
MNTTVQPQTQ HPSSHAVTGN HLYPQPHLHQ PVQSGAPQQH TTDMQSHGVP HSQSRTPVQI  60
QSQSPQQPPV MRLPPSHIPN QQQPALLPFP GQIRNINPAK QQLVHSYAQQ PGNTVQQRPL  120
MHAVQRSIPR HHRPYVQQQP PTQLHPRGQS HSFPLHVHAY TQSQRNIALS QGIQLSQSNI  180
GGSGRPMMPI HGVQSQTSVQ TTGGLHLRPV HPAVNLPSTN QSNMVRTKNL VQSGANSRPT  240
TSERHAEQES ESSAQQIAKN VTHDVGTASA VVGDAEVKTV KSEMDMKSID NEYKPTGEDK  300
TNHGDTSSKE IPDIHALENG ESVSQSMLNA ADQNKVRKLG VARGRHYRGV RQRRLGKFTA  360
EIRDPAKKVS RNRVWLGCYE TSEEAALAYD RAAYRIHGSK ALLNFPICHT RLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-18ERF family protein