PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000062.1_g290.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 171aa    MW: 19798.4 Da    PI: 8.3141
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000062.1_g290.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1401.3e-1282170171
                       FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkakl 66 
                                ++Y+eY+++ GF +r+++s+k+ +r +e+t+r+fvC  egk  +++++                  +++ ++ ++ ++gCka++
  Pav_sc0000062.1_g290.1.br  82 NYYEEYGRQEGFWIRTRSSSKTrRRLDEVTSRQFVCAHEGKYVPKNTSqkaseendernlseienMKRTGKNCSTVKCGCKASM 165
                                69*************999888867889**************98888778899*99999999998666667788999******** PP

                       FAR1  67 kvkke 71 
                                ++k++
  Pav_sc0000062.1_g290.1.br 166 RIKLD 170
                                **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MFVVTDNLVV RPMSRIFELQ VLTDLNVHVT DIEDQIVHVG KNEVEEIIQV ENGETSTPKK  60
KVTQLKAPYA GMVFNTMEEA RNYYEEYGRQ EGFWIRTRSS SKTRRRLDEV TSRQFVCAHE  120
GKYVPKNTSQ KASEENDERN LSEIENMKRT GKNCSTVKCG CKASMRIKLD R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.15e-07FAR1 family protein