PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000062.1_g590.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 307aa    MW: 34733.1 Da    PI: 9.8607
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000062.1_g590.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32.1e-14135179347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT++E++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Pav_sc0000062.1_g590.1.mk 135 PWTEDEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 179
                                8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MKFEMEILSP SSYFSSSNWL LEESKSTQWT PAENKMFENA LAVHDKDTPD RWIKVAAMIP  60
GKTAMDVMKQ YEELEVDVGK IEAGLVPIPG YSASPFTLEW VNRHGYDGFK QSYGLGGKRS  120
SSARPADHER KKGVPWTEDE HKLFLLGLKK YGKGDWRNIS RNFVVTRTPT QVASHAQKYF  180
IRQLSGGKDK RRASIHDITT VNLNDMRTPS PDNKRPLSPE HSSVPQQPNS AATARTPFQW  240
HHQQGGGANM AFNQAHRNMF MPHPYGISSY GLKMQGQDLH KVAANNSYYG PQNMVFQMQS  300
APHYPYG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-94MYB family protein