PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000069.1_g080.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 231aa    MW: 25950 Da    PI: 4.8727
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000069.1_g080.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161463147
                               TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                               +g+WT+ Ed++l+d+vk +G g     W++Ia +++ gRt++++k++w+++
  Pav_sc0000069.1_g080.1.mk 14 KGAWTALEDQILIDYVKDHGEGrwgkLWTLIAGRLP-GRTDNEIKNYWNSV 63
                               79**********************************.***********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MGRIYRCEKD GLSKGAWTAL EDQILIDYVK DHGEGRWGKL WTLIAGRLPG RTDNEIKNYW  60
NSVLRKRAQE SHSERSRNEW KTTVDTEKAV PSLKMDSHLI QNGLTPTSWI NNKQLGTTNT  120
LAEPLISGVE ATNMEAKSDS SYGFLPITRE NDMTRNFIRD LNAGELGISE FLHTDFSKLC  180
ELNTTIFDCT SGCRNGSLMS TSTAEAPLYL QEWLNDWAAD DNCLPEAALG P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.15e-19MYB family protein