PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000069.1_g230.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Nin-like
Protein Properties Length: 374aa    MW: 42228.1 Da    PI: 4.4411
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000069.1_g230.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK78.28.8e-25286336252
                     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                +++++l+dl+ y +lpi++AA+ L+vc+Tv+KriCR++G++RWP+Rki+s+
  Pav_sc0000069.1_g230.1.mk 286 TANMTLDDLRDYVHLPIEKAARRLNVCPTVVKRICRRNGLRRWPSRKITSI 336
                                789*********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MADPRAVVPY HDPYDSGPYT EIMNLLNDSE HPRIDENNVP PLEGSLASPN PTMFDEEIQD  60
VDEPLMDQAM WDFIYGSDNG GEGINSQAGP SQIFTESSGT NPPRGDGNEQ NHGFGNVRPL  120
SVWPLPSDPI NCTFCQVFRE IVHFNSDNVM KLEIHGRLGV ICHAILQSRP NANVNSSGNH  180
QYQMLDFCKT PGEEVKQFLM QYCLERKLEG YIMQQDPLTF FYEALCVGVD WDVILNPTDD  240
FNFPPSPLDS GTAGDMEQPA AVQPEAGEHE IETNPRISLA EQRERTANMT LDDLRDYVHL  300
PIEKAARRLN VCPTVVKRIC RRNGLRRWPS RKITSINRQI SRLRPSLDSD DAETRVHAEA  360
EISRLEREIA ELVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.11e-14Nin-like family protein