PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000069.1_g630.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 374aa    MW: 41863.8 Da    PI: 4.5943
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000069.1_g630.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.98.7e-35421332102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k++e++ed++++ ++sws+  nsfvv+d+++f++++Lp+yFkh nf+SF+RQLn+YgF+kv+ ++         weF+++ 
  Pav_sc0000069.1_g630.1.mk  42 FLTKTFEMVEDPSTDAIVSWSRARNSFVVWDSHKFSTTLLPRYFKHGNFSSFIRQLNTYGFRKVDPDR---------WEFANEG 116
                                9****************************************************************999.........******* PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                                F  g+++ll++ikr+++
  Pav_sc0000069.1_g630.1.mk 117 FLGGQRHLLKTIKRRRH 133
                                **************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MDGVVVKEEE IVTCTVGSSS SSSSSISPQP IEGLHEVGPP PFLTKTFEMV EDPSTDAIVS  60
WSRARNSFVV WDSHKFSTTL LPRYFKHGNF SSFIRQLNTY GFRKVDPDRW EFANEGFLGG  120
QRHLLKTIKR RRHVSQSMQQ EGGGGACVEL GQYGLETELE RLKRDRNVLM TEIVRLRQQQ  180
QNSKEQVMAM EGRLQTTEKK QQQIMAFLAK ALNSPSFIQN LLEKKAQNKE LRGMEIGRKR  240
RLAASPSVEN LQEKPKTHVV DYSASQDQGE LETMGSEIET FISAAALDNE SSSDIIDPHS  300
SSVGGNLGIV NETTWEELWS DELIGGNPEE DVIVVGDESD IDVAVEDLVA EPADWGEDLQ  360
ELVDQMGYLI RSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKTIKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-128HSF family protein