PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000069.1_g700.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 171aa MW: 19815.4 Da PI: 7.915

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000069.1_g700.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.4	8.9e-37	6	105	2	101
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 CaaC+++r+kC++dC +apyfpa++ ++f n+hklFG+ +++k+l+++++++r+ am s+ eAe rardPv G+++ i++l + Pav_sc0000069.1_g700.1.mk 6 CAACRFQRKKCTQDCLMAPYFPATRFQQFLNAHKLFGVGKITKTLNSVSPQQRSSAMYSVKAEAEYRARDPVGGCYNEIKSLLW 89 ********************************************************************************** PP DUF260 86 qleqlkaelallkeel 101 ++++++ el +++++l Pav_sc0000069.1_g700.1.mk 90 KIRTTEDELRHVHSQL 105 ********999885 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MKHQTCAACR FQRKKCTQDC LMAPYFPATR FQQFLNAHKL FGVGKITKTL NSVSPQQRSS 60 AMYSVKAEAE YRARDPVGGC YNEIKSLLWK IRTTEDELRH VHSQLYMFRA GGENAMAQPL 120 DGYEYNVVQE LENDSQLHHQ LQKNIVQEQS DVVENHQEQR NVFDLRSDGM L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-39	LBD family protein