PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000071.1_g450.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 859aa MW: 94862.1 Da PI: 5.0828

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000071.1_g450.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.7	6.6e-16	164	210	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Pav_sc0000071.1_g450.1.mk 164 VHNMSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 210 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence
MGDTYDHYYK NATCSSSPSA SVSPAAAAPA APAQPPSTSD EISLFLQQIL LRSSSSLASV 60 VAHTGKAPQF LFSSSPSIAA LPDHLSRPCH SMFLGDGITA VDSSAALLQA GNPNVSSSSF 120 GASENETDEY DCESEEGLEA LVEEAAGKPG CGRSSSKRSR AAEVHNMSEK RRRSRINEKM 180 KALQNLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMRMDLG EENRPLHLDM TGTLLMNQES 240 PTQNLFHFSN QCTDANQSYV PDMSNVVNSE TSFELESSMQ AHLGPFQLPN SSKEICREDM 300 LQHQQINVNH SETNPLACAQ EEEGLQMITS RLKEGTYDAL IQVCDISICF RFDLYFRKNP 360 FGGEYTIFAG LEECIRFIAN FKLSEDEIDF VRESLSPSCE DGFYDYLKGV DCSGVEVYAI 420 TEGSVVFPKV PLLRVEGPIA VVQLLETPFL NLINYASLVA TNAARHRFVA GESKMLLEFG 480 LRRAQGPDGG IGASKYCYMG GFHATSNVAA GKLFGIPLRG THSHAFVSSF MSPDEIIDKS 540 LRSSDSQSTC EDFVSLAQTW LSKIQWSNSL NGTFGETNQS ELAAFTSYAL AFPDNFLALV 600 DTYDVMRSGI PNYCAVALAL NDLGYKATGI RLDSGDLAYL SCEARKIFHT IEKEFGVPGF 660 GKTNITASND LNEETLDALN KQGHEVDSFG IGTYVVTCYA QAALGCVFKL VEINNQPRIK 720 LSEDVTKVSI PCKKRSYRLY GKEGYPLVDI MTGENEPPPK VGERILCRHP FNESKRAYVV 780 PQRVEELMKC FWSGSPGGIR EDLPPLKDIR DRCITQLRKM RPDHMRRLNP TPYKVSVSAK 840 LYEFIHFLWL NEAPVGELQ

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence

MGDTYDHYYK NATCSSSPSA SVSPAAAAPA APAQPPSTSD EISLFLQQIL LRSSSSLASV  60
VAHTGKAPQF LFSSSPSIAA LPDHLSRPCH SMFLGDGITA VDSSAALLQA GNPNVSSSSF  120
GASENETDEY DCESEEGLEA LVEEAAGKPG CGRSSSKRSR AAEVHNMSEK RRRSRINEKM  180
KALQNLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMRMDLG EENRPLHLDM TGTLLMNQES  240
PTQNLFHFSN QCTDANQSYV PDMSNVVNSE TSFELESSMQ AHLGPFQLPN SSKEICREDM  300
LQHQQINVNH SETNPLACAQ EEEGLQMITS RLKEGTYDAL IQVCDISICF RFDLYFRKNP  360
FGGEYTIFAG LEECIRFIAN FKLSEDEIDF VRESLSPSCE DGFYDYLKGV DCSGVEVYAI  420
TEGSVVFPKV PLLRVEGPIA VVQLLETPFL NLINYASLVA TNAARHRFVA GESKMLLEFG  480
LRRAQGPDGG IGASKYCYMG GFHATSNVAA GKLFGIPLRG THSHAFVSSF MSPDEIIDKS  540
LRSSDSQSTC EDFVSLAQTW LSKIQWSNSL NGTFGETNQS ELAAFTSYAL AFPDNFLALV  600
DTYDVMRSGI PNYCAVALAL NDLGYKATGI RLDSGDLAYL SCEARKIFHT IEKEFGVPGF  660
GKTNITASND LNEETLDALN KQGHEVDSFG IGTYVVTCYA QAALGCVFKL VEINNQPRIK  720
LSEDVTKVSI PCKKRSYRLY GKEGYPLVDI MTGENEPPPK VGERILCRHP FNESKRAYVV  780
PQRVEELMKC FWSGSPGGIR EDLPPLKDIR DRCITQLRKM RPDHMRRLNP TPYKVSVSAK  840
LYEFIHFLWL NEAPVGELQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	1e-40	bHLH family protein