PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000072.1_g690.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25442.9 Da    PI: 9.6942
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000072.1_g690.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.3e-291059251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               rien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye++s
  Pav_sc0000072.1_g690.1.mk 10 RIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59
                               8***********************************************86 PP
2K-box74.82.3e-2578178597
                      K-box   5 sgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK......nellleqieel 80 
                                ++++   +++++++l+qe++ + k+ie L+ ++R+llGe+L+s++++eLq+LeqqLe+s++++R++K      +++++eqie+l
  Pav_sc0000072.1_g690.1.mk  78 TNNKsvSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGSCTIEELQELEQQLERSVSNVRARKvdlkpnTQVFKEQIEQL 161
                                344446899*********************************************************9777777799******** PP

                      K-box  81 qkkekelqeenkaLrkk 97 
                                ++kek+l  en++L +k
  Pav_sc0000072.1_g690.1.mk 162 REKEKALAAENERLIEK 178
                                **************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS  60
SMQTTIERYQ KHTKDNHTNN KSVSTDQNMQ HLKQESSSMM KQIELLEVSK RKLLGEGLGS  120
CTIEELQELE QQLERSVSNV RARKVDLKPN TQVFKEQIEQ LREKEKALAA ENERLIEKCG  180
SIQPRQAPNE QRENLAYTES SPSSDVETEL FIGLPERRVK R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-87MIKC_MADS family protein