PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000093.1_g550.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 84aa    MW: 9708.92 Da    PI: 9.7509
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000093.1_g550.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.2e-09348346
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                               +WT+   + + +a + + ++   +W  +a+ +g g+t++++k ++  
  Pav_sc0000093.1_g550.1.br  3 SWTAKQNKAFEKALAVYDKDtadRWYNVAKAVG-GKTPEEVKRHYER 48
                               7********************************.**********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    
MSSWTAKQNK AFEKALAVYD KDTADRWYNV AKAVGGKTPE EVKRHYERLV EDVKHIESGQ  60
VPFPDYRTTG GNGEEKRMRN LKLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.16e-41MYB_related family protein