PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000094.1_g330.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 185aa    MW: 21138.2 Da    PI: 10.378
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000094.1_g330.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC27.19e-09111161757
                      NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfile 57 
                                e+++e+++++k  ++P+ r+k+i+++++   +is +a  l+ ka e f+ +
  Pav_sc0000094.1_g330.1.mk 111 EEEVEEKEEVKSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQK 161
                                45699***********************999***************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MATPRKDITP KKSKETKKPS SKAITPKKTQ ETKKPSIKKT PETKKPGTKK TISNKNQTSN  60
GNVSDSDVEE IPSSSSESLK DTKQNEGKIT KTPTSKSKKS NKKRKQKQEE EEEVEEKEEV  120
KSYTFPMERV KRIIRSEDSE MRISHDAVFL VNKATEKFLQ KFCEDAHACC VKDRKKSLAY  180
KHLCM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1519RKDITPKKSKETKKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.18e-20NF-YC family protein