PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000103.1_g1750.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 116aa    MW: 13257.9 Da    PI: 9.9023
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000103.1_g1750.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.72e-201564150
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                krien+  r vtfskRr g+ KKA+EL +LC+aev  ++fs++gk + y+
  Pav_sc0000103.1_g1750.1.mk 15 KRIENQDDRLVTFSKRRSGVYKKASELATLCGAEVGAVVFSPSGKPFSYA 64
                                79******************************************988886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    
MEGRKTKGSQ KIEMKRIENQ DDRLVTFSKR RSGVYKKASE LATLCGAEVG AVVFSPSGKP  60
FSYANSSIDS IANRFLNGHR HHHQHHDNIN DDIMNIDALD RSRHTIVEAY RQFLIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-27M-type_MADS family protein