PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000107.1_g160.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25215.9 Da    PI: 10.0293
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000107.1_g160.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.88e-30959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krien   rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Pav_sc0000107.1_g160.1.mk  9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFAS 59
                               79***********************************************86 PP
2K-box71.13.5e-24891731498
                      K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                                +e+ + +   + k+i+ ++ ++ +llG++Les+s++eL+q e+qLe++l+kiR++K++ll+eqie+l++ ek+l e+n +Lr+k
  Pav_sc0000107.1_g160.1.mk  89 MERGKDDTCSMAKKIDFIEASKQKLLGNCLESCSIEELHQTENQLERGLSKIRARKTQLLREQIEKLKEEEKNLFEQNAKLREK 172
                                566667777899**********************************************************************98 PP

                      K-box  98 l 98 
                                 
  Pav_sc0000107.1_g160.1.mk 173 C 173
                                5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFST RGKLYEFASS  60
SFSISNTLDR YQRRVKDQGL GSKAVQVDME RGKDDTCSMA KKIDFIEASK QKLLGNCLES  120
CSIEELHQTE NQLERGLSKI RARKTQLLRE QIEKLKEEEK NLFEQNAKLR EKCGMQPLGP  180
PSKRKDGENL AVRQPRTPDM EDVETDLVIG PPERRRSGQN P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-65MIKC_MADS family protein