PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000107.1_g490.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 238aa    MW: 26664.1 Da    PI: 5.9365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000107.1_g490.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1757108155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                + y+GVr++  + +Wv+e r+p  n+k+ r++lg++ tae+Aa+a++ a+++++g
  Pav_sc0000107.1_g490.1.br  57 PVYRGVRRRN-NDKWVCEMREP--NNKKSRIWLGTYPTAEMAARAHDVAALAFRG 108
                                68*****887.8******9998..4478************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MDVSQLSDSV DQPESSSLSD VSFKTRGPSW SDGEVILASS RPKKRAGRRV FKETRHPVYR  60
GVRRRNNDKW VCEMREPNNK KSRIWLGTYP TAEMAARAHD VAALAFRGKL ACLNFADSAW  120
RLPVPASMDP MDIRRAAAEA AEGFRPVEFG GVCSGSSDEK ERMVVQVEEK SKKGGVNLER  180
SRSLSFSYLD EDEVFDMPRL LLDMAEGLLL SPPQRLDSDT NLDDMGTDAD IKLWSFSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.12e-60ERF family protein