PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000110.1_g290.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 382aa    MW: 43870.6 Da    PI: 6.1038
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000110.1_g290.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.61.5e-081958645
                               HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               k +r+v+fskRr g++ K +  +   +ae+ ++++s+ g+
  Pav_sc0000110.1_g290.1.mk 19 KNRRYVSFSKRRSGLFSKGKDFCKKFEAEIGIVVLSEAGR 58
                               689**********************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MKRKASEVTM EQKKAKQYKN RRYVSFSKRR SGLFSKGKDF CKKFEAEIGI VVLSEAGRPY  60
WSLDNPSLDA VLDRFMQSDQ APTNTIDFKV KPQKKRKREE QDNEVQGQLA EEVKSCRTVK  120
DMFSLRDKYL VLLQDYTNKT MKGSHVLEEG KAKCVSTSPS NLSFEDNVWV ETISRHKDIC  180
SGLTLKLDSE HDHRLGNNNG VHGGRNDGWF WDEILEDGYT QGVLMEPISK SKDVLYDSTQ  240
NFESDRNVFD THHGNINGGE GSSWCKDWED GKAQCALMQP ISKSEEVLHN STQSLESNHN  300
VFTDQHGNNN GDDGTFWDRI LAYDKTHQLA NSGDVLFNST PNFECDRFNN KNDGDDNNIS  360
FWDKILEEGV PQHQMRCRYC SW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-12M-type_MADS family protein