PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000119.1_g560.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 207aa    MW: 23124.9 Da    PI: 7.0522
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000119.1_g560.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000253353323
                               ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                               C  C+++F +   L +Hi +H
  Pav_sc0000119.1_g560.1.mk 33 CRLCDRVFMSTQALINHIESH 53
                               ******************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MSGCNWNMRH GGNVHGSNCA PASMLNGSTE IACRLCDRVF MSTQALINHI ESHIVDDGLT  60
ASRLRQLIQQ TNNNPPIRSN PAFPLQNPFH QRNPFHDVHN NQIGFAPPQP HHQYPYPQQQ  120
QLSPYALPRN VNVNVNQGVV GSHYMVMQSA NQTAARMARE EDDLSSDCTM PLLSQLERPL  180
PPVNYELDRR GNIGEASSDN LVLTLKL