PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000120.1_g190.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 434aa MW: 47451.2 Da PI: 8.0238

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000120.1_g190.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128	3.7e-40	186	263	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +akeyhrrhkvCe+hska++v+v g+eqrfCqqCsrfh +sefDe+krsCrrrLa+hnerrrk+++ Pav_sc0000120.1_g190.1.mk 186 RCQVEGCHVPLMNAKEYHRRHKVCEMHSKASKVTVLGQEQRFCQQCSRFHVVSEFDESKRSCRRRLAGHNERRRKSSH 263 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MEIGGNMNMN MLGLDHNNNS HISSSSRGQN GNNNTYLTNW DIWGRATSTS ASAAATDNNS 60 FYSPAAVTVA ATGGASSSAT CSEASAGGHA FIMGHPLQQQ HSSFYGGGAL SHYHPDPHLM 120 CLKLGKRHYF EDHARAHAHA LDDRHVAGLP VGVMSKRGRG GAAAAAAAAQ QLYGSGATLA 180 LKVVPRCQVE GCHVPLMNAK EYHRRHKVCE MHSKASKVTV LGQEQRFCQQ CSRFHVVSEF 240 DESKRSCRRR LAGHNERRRK SSHDSLSRTS SQENGRFGYL STPTGRALSL LSSRNTGFDS 300 WVSPSDLSSR SSAALRELIA ENRAAVLARQ LINASEDRNW DSSSHNNQAT EDLFCDHGQS 360 WSNSVEPQQH QMFSDHNYPH GWDRFHEGSG AHLTLDLRQA PSPAYGFLPE RGKTKAEEDQ 420 ECDLWNSFHG ASVV

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MEIGGNMNMN MLGLDHNNNS HISSSSRGQN GNNNTYLTNW DIWGRATSTS ASAAATDNNS  60
FYSPAAVTVA ATGGASSSAT CSEASAGGHA FIMGHPLQQQ HSSFYGGGAL SHYHPDPHLM  120
CLKLGKRHYF EDHARAHAHA LDDRHVAGLP VGVMSKRGRG GAAAAAAAAQ QLYGSGATLA  180
LKVVPRCQVE GCHVPLMNAK EYHRRHKVCE MHSKASKVTV LGQEQRFCQQ CSRFHVVSEF  240
DESKRSCRRR LAGHNERRRK SSHDSLSRTS SQENGRFGYL STPTGRALSL LSSRNTGFDS  300
WVSPSDLSSR SSAALRELIA ENRAAVLARQ LINASEDRNW DSSSHNNQAT EDLFCDHGQS  360
WSNSVEPQQH QMFSDHNYPH GWDRFHEGSG AHLTLDLRQA PSPAYGFLPE RGKTKAEEDQ  420
ECDLWNSFHG ASVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-34	SBP family protein