PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000120.1_g250.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 252aa    MW: 28088.8 Da    PI: 6.0866
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000120.1_g250.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.83.1e-18159193135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Pav_sc0000120.1_g250.1.mk 159 CAHCASEKTPQWRAGPMGPKTLCNACGVRFKSGRL 193
                                *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MEDVYGGGTS ASSAQQQQDY FPIDDLLDLS NDDLFSSSTS STDSIDLHPP PLPSHLHVSS  60
TVFNPTAATD FTNDLCVPSD DVADLEWLSR FVDDSFTDFP TTNVFGSASF PNDTSSLFPS  120
RVRTNRSKWG GPPEPSDSRA KPKREPSEAS PSPSKPRRCA HCASEKTPQW RAGPMGPKTL  180
CNACGVRFKS GRLVPEYRPA ASPTFVLTQH SNSHRKVLEL RRQKEASQQQ QPEEQHQQKQ  240
QFYLHRDEYQ VC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-56GATA family protein