PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000124.1_g210.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 677aa    MW: 76366.9 Da    PI: 8.4989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000124.1_g210.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.6e-191461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT+eEd++l+d+++++G g+W+t ++  g++R++k+c++rw +yl
  Pav_sc0000124.1_g210.1.br 14 RGPWTPEEDKKLIDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWANYL 61
                               89********************************************97 PP
2Myb_DNA-binding53.46.1e-1767111147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rgr++ eE+e++++++  lG++ W++Ia++++ gRt++++k++w+++
  Pav_sc0000124.1_g210.1.br  67 RGRFSFEEEEIIIQLHSVLGNK-WSAIASRLP-GRTDNEIKNYWNTH 111
                                89********************.*********.************97 PP
3Myb_DNA-binding58.51.5e-18343389248
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                g+WT+eEd++l+d+++++G g+W+t ++  g++R++k+c++rw +yl
  Pav_sc0000124.1_g210.1.br 343 GPWTPEEDKKLIDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWANYL 389
                                79*******************************************97 PP
4Myb_DNA-binding53.46.1e-17395439147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rgr++ eE+e++++++  lG++ W++Ia++++ gRt++++k++w+++
  Pav_sc0000124.1_g210.1.br 395 RGRFSFEEEEIIIQLHSVLGNK-WSAIASRLP-GRTDNEIKNYWNTH 439
                                89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    
MGKIPCCEKN GLKRGPWTPE EDKKLIDYIQ KHGHGRWRTL PKNAGLKRCG KSCRLRWANY  60
LRPDIKRGRF SFEEEEIIIQ LHSVLGNKWS AIASRLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHTPRL DLLELSSAIC STLYSSSSPH NPQINVPNLL GIGPIMDPDL LNLATTFLSC  180
QQNQIGFSQI NQTQFQSQLT QPNQIQNPVQ EIQTCTTSNT LNVPFLSYPS SSNLAGQGFV  240
PTTNQLGYYD SKYESMISYI PHQNYNQPCT SNNVNQYQNF QNMSSFGSVL SSTPSSSPAT  300
TLNSSPAITY INSSTEDERD SFCSNILMHH DIPNGLNATK LLGPWTPEED KKLIDYIQKH  360
GHGRWRTLPK NAGLKRCGKS CRLRWANYLR PDIKRGRFSF EEEEIIIQLH SVLGNKWSAI  420
ASRLPGRTDN EIKNYWNTHI RKRLLRMGID PVTHTPRLDL LELSSAICST LYSSSSPHNP  480
QINVPNLLGI GPIMDPDLLN LATTFLSCQQ NQIGFSQINQ TQFQSQLTQP NQIQNPVQEI  540
QTCTTSNTLN VPFLSYPSSS NLAGQGFVPT TNQLGYYDSK YESMISYIPH QNYNQPCTSN  600
NVNQYQNFQN MSSFGSVLSS TPSSSPATTL NSSPAITYIN SSTEDERDSF CSNILMHHDI  660
PNGLNATKLL YERNIMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-96MYB family protein