PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000129.1_g050.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 155aa    MW: 17442.7 Da    PI: 6.5018
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000129.1_g050.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.95.1e-36131121100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                aCa+Ck +rrkC + C +apyfpa++ ++f+n+hk+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i+ l+
  Pav_sc0000129.1_g050.1.br  13 ACASCKQQRRKCDETCEMAPYFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAESILTEGNARKNDPVHGCLGIIRGLN 96 
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                 q++ l+ el+ +k++
  Pav_sc0000129.1_g050.1.br  97 AQIQGLERELHIMKQH 112
                                ***********99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MENRDQGAAQ NHACASCKQQ RRKCDETCEM APYFPASRYS EFQNAHKIFG VSNIQKIMAM  60
AAPDQRQAAA ESILTEGNAR KNDPVHGCLG IIRGLNAQIQ GLERELHIMK QHLELCKEKE  120
ELDGKINQSK QEDLQHDQSD GLNFPSQILP DLARL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-30LBD family protein