PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000129.1_g840.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 379aa MW: 42953.3 Da PI: 8.4764

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000129.1_g840.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	76	119	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e Pav_sc0000129.1_g840.1.mk 76 DPEPGRCRRTDGKKWRCSKEAFADSKYCERHMHRGKNRSRKPVE 119 79***************************************987 PP
2	QLQ	57.8	3.3e-20	8	43	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l+yKy++++ +Pp+Ll+ i++ Pav_sc0000129.1_g840.1.mk 8 PFTPSQWQELEHQALIYKYMVSGISIPPDLLFSIKR 43 8*******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MSGRTRFPFT PSQWQELEHQ ALIYKYMVSG ISIPPDLLFS IKRSCLDSPL PSKLFSHHPP 60 HIGWSCFQMG LGRKIDPEPG RCRRTDGKKW RCSKEAFADS KYCERHMHRG KNRSRKPVEV 120 FKTPITTNSN PSSSSTPTTI SSITSKNNPP STSTPTFHSL SSSLSSLSSD SHHTQLNHSS 180 YNTNLDYHPF LYHHTSSSRP PGFGLSHQER NTSLLLDSGS YPQANSEYRN RYVYGLKEEV 240 DEHAFFSEPS GSVRDFSGSS SMDDSWQFTP LTMSTCTSSS SKQRSCSALQ SEHSHLQLQS 300 NITPKQQNYY ALGSDMKMDR NEGTQKTIHR FFDEWPLKDK DSWLDLDDKS SNSGSVSNTR 360 LSISTHDFPI FSSRNHNDD

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MSGRTRFPFT PSQWQELEHQ ALIYKYMVSG ISIPPDLLFS IKRSCLDSPL PSKLFSHHPP  60
HIGWSCFQMG LGRKIDPEPG RCRRTDGKKW RCSKEAFADS KYCERHMHRG KNRSRKPVEV  120
FKTPITTNSN PSSSSTPTTI SSITSKNNPP STSTPTFHSL SSSLSSLSSD SHHTQLNHSS  180
YNTNLDYHPF LYHHTSSSRP PGFGLSHQER NTSLLLDSGS YPQANSEYRN RYVYGLKEEV  240
DEHAFFSEPS GSVRDFSGSS SMDDSWQFTP LTMSTCTSSS SKQRSCSALQ SEHSHLQLQS  300
NITPKQQNYY ALGSDMKMDR NEGTQKTIHR FFDEWPLKDK DSWLDLDDKS SNSGSVSNTR  360
LSISTHDFPI FSSRNHNDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-55	GRF family protein