PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000130.1_g780.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 319aa    MW: 35422.3 Da    PI: 4.9031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000130.1_g780.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1878126355
                        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+G+r+++ +g+W+AeIrdp++     r++lg+f t+eeAa+a+++ ++ ++g
  Pav_sc0000130.1_g780.1.mk  78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDREARIIRG 126
                                9*******.**********954...4*******************99988877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MCGGAILADL IPRNRGLRVT ASDIWPNSPF ARLNPDNFFD SNPSPLTRTD SSPRKRTQPT  60
SGNRQEEKPP KRARKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTP EEAARAYDRE  120
ARIIRGKKAK VNFPNEDDDI RTQTYLRNPN PLPLFQPSSE NLSNSHMPKS FDLGFGYDLN  180
QIATISSNSN SNSNSKGLSS MNLVNTDPIV ISGEENSGSG SDGAYSSTAG LLGCNQNGEA  240
EVKEVEETKE GILNKDAIAI MEDNEVQKLS EELMAYENMM KFYQIPYLDG QSTATPNPPA  300
QEGMVGDLWS FDDDDVSAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-31ERF family protein