PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000142.1_g110.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 301aa    MW: 32787.7 Da    PI: 10.3261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000142.1_g110.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.2e-11555146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                               +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  Pav_sc0000142.1_g110.1.mk  5 KQKWTAEEEAALKAGVLKHGAGKWRTILTDPEfnsilHLRSNVDLKDKWRN 55
                               79***********************************88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MGAPKQKWTA EEEAALKAGV LKHGAGKWRT ILTDPEFNSI LHLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRNLPNPK HDNNPLAVST VIQSHEEIVD AKPLAISGGK LQTTESKQPI  120
ARLDHLILEA ITNLKELGGS DRAAIAMYIE EQYWAPPNLK KLLSSKLKHM AANGKLIKVK  180
HRYRIAPSSA SSEKRRSSSM LLLEGKQKDS SRADKSNVNI LTKSQVDADL SKMRSMTAQE  240
AAAAAAQAVA EAEAAIAAAE EAAREAEAAE AEAEAAQVFA KAAMKALKCR RLDLDMKLAH  300
G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.14e-76MYB_related family protein