PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000143.1_g250.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 189aa    MW: 20411.2 Da    PI: 7.6779
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000143.1_g250.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.85.1e-40141131100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaCk+l+rkC++ C++apyf  ++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq
  Pav_sc0000143.1_g250.1.mk  14 SCAACKLLKRKCSPTCIFAPYFLPDEPKKFAKVHKVFGASNVSKILTEVPEERREDTVNSLAYEAEARLRDPVYGCIGAIAMLQ 97 
                                6*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                +++ +l+++la ++++
  Pav_sc0000143.1_g250.1.mk  98 RKMIELQHDLAIARAR 113
                                **********999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MNMKGSHEPR STSSCAACKL LKRKCSPTCI FAPYFLPDEP KKFAKVHKVF GASNVSKILT  60
EVPEERREDT VNSLAYEAEA RLRDPVYGCI GAIAMLQRKM IELQHDLAIA RARLACYASN  120
SLSSSSPTAS ASSCYGVLDD QLSEAALSAV GFPACSGFSN SFMSQSAPEL NSHSQHGQTS  180
DFSCAPYIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.14e-62LBD family protein