PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000143.1_g320.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 276aa    MW: 30435.9 Da    PI: 8.4875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000143.1_g320.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-1484130354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++++k+L
  Pav_sc0000143.1_g320.1.mk  84 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 130
                                79*************************8.....7****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MESKVLEKCW LFLAMENCYC AGPQGATWAP YNSAALSNES SSFPLPWPPH ASSSTQFQFC  60
GFPNSWSATA EGADEEDRAA SASKSHSQAE KRRRDRINAQ LATLRKLIPK SDKMDKAALL  120
GSVIDHVKDL KRKAMEVSKA FMVPTEMDEI TIDSDPAQAA ANSSSNNINM NKSRCSIVIR  180
ASVCCDDRPE LFSELIQVLK GLKLTAVRAD MASVGGRIKS VLVLCKDSEE DEALCISTLK  240
QSLKLVLSKI CASSMAPNCR IRSKRQRFFL PFQYPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.18e-48bHLH family protein