PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000157.1_g100.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

WRKY

Protein Properties

Length: 380aa MW: 40853.6 Da PI: 4.7584

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000157.1_g100.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	52.9	7.3e-17	197	234	22	59
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +sYYrC+ +gCpvkk+ver+++d kvv+ tYeg+H+h+ Pav_sc0000157.1_g100.1.mk 197 QSYYRCSNPGCPVKKHVERASHDSKVVIATYEGQHDHD 234 79***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MISLGEPGTD KIASDIVPKK ESSNSEIHAP HQTPDNGICP LQSDHRGNVE SLIPEKSLQL 60 PDGVGTASQS NQEGSVSSLT SEKAPQTPET SALRQVERTH NGQITDTVYF GEHEHPKAQV 120 SVPVAVSFLV SIVEERPEEL LLTGVEGKPS DVHGHTSNQI EPVDPSQLST VADNEGVQRV 180 LSQSNRTRDG DPDSKRQSYY RCSNPGCPVK KHVERASHDS KVVIATYEGQ HDHDMPPTRT 240 VTHNASASNV ITTARNGESG TTSEGNAVCH DTSPEHEDKP NKQLYVEPRT KSSDVAGCDM 300 VVDSDLGPER KLNEQVVGKA CTTEESDAPD IIVPRANELQ NGESGIKSEG NNACIDTVVH 360 GNLCPESNSP EQKNPKAEPV

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MISLGEPGTD KIASDIVPKK ESSNSEIHAP HQTPDNGICP LQSDHRGNVE SLIPEKSLQL  60
PDGVGTASQS NQEGSVSSLT SEKAPQTPET SALRQVERTH NGQITDTVYF GEHEHPKAQV  120
SVPVAVSFLV SIVEERPEEL LLTGVEGKPS DVHGHTSNQI EPVDPSQLST VADNEGVQRV  180
LSQSNRTRDG DPDSKRQSYY RCSNPGCPVK KHVERASHDS KVVIATYEGQ HDHDMPPTRT  240
VTHNASASNV ITTARNGESG TTSEGNAVCH DTSPEHEDKP NKQLYVEPRT KSSDVAGCDM  300
VVDSDLGPER KLNEQVVGKA CTTEESDAPD IIVPRANELQ NGESGIKSEG NNACIDTVVH  360
GNLCPESNSP EQKNPKAEPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04880.2	1e-26	WRKY family protein