PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000157.1_g770.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 247aa    MW: 25415.9 Da    PI: 6.628
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000157.1_g770.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.86.8e-5859154297
                      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                                reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplkv
  Pav_sc0000157.1_g770.1.mk  59 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKV 142
                                89********************************************************************************** PP

                      NF-YB  86 ylkkyrelegek 97 
                                yl+k+re+egek
  Pav_sc0000157.1_g770.1.mk 143 YLQKFREVEGEK 154
                                **********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
CIINPPDPTD PNTSASPPAS LSDAVHPRRP RPPIMADSDN DSGGNNDGSH AQSGELSARE  60
QDRFLPIANV SRIMKKALPA NAKISKDAKE TVQECVSEFI SFVTGEASDK CQREKRKTIN  120
GDDLLWAMTT LGFEEYVEPL KVYLQKFREV EGEKTTMGGR DKDSAGGGGG GASGGGVSSG  180
SSGGGGGYNG VYGGMVMMGN HHHNQGHVYG SGGGYQQHQM GMGSGGVRVG NSGGSGSGGN  240
GGASVVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.16e-72NF-YB family protein